Menteric::S1tm001

Displays a multiple alignment of the Salmonella typhimurium LT2 genome with related bacteria.

Address or gene name in the S1tm001 (reference) genome:

Address range: 1-4951371 (including the plasmids). The complete gene list can be found here.

Conservation criterion for drawing the conserved regions in the alignment: letter agreement (agree) information content (infocon) phylogenetic distance (phylogen) distance from a center sequence (kkno) distance from an unknown center sequence (kunk)

Types of functional sites in the display:       Genes     Promoters     Protein binding sites
 

Genomes to be included in the display (up to 11); by default, the first 11 genomes are selected.

S1tm002   (Salmonella typhimurium SL1344)	S1tm007a   (Salmonella typhimurium 14028)
S1tm007f   (Salmonella typhimurium 14028)	S1ty001   (Salmonella typhi CT18; GP)
S1ty002   (Salmonella typhi Ty2; GP)	S1pa001   (Salmonella paratyphi A; GP)
S1pb001   (Salmonella paratyphi B; GP)	S1pb002   (Salmonella paratyphi B SARB47)
S1pc001   (Salmonella paratyphi C)	S1en001   (Salmonella enteritidis)
S1en002   (Salmonella enteritidis PT4)	S1en003   (Salmonella enteritidis)
S1du001   (Salmonella dublin; GP)	S1ga001   (Salmonella gallinarum str. 287/91; GP)
S1ga002   (Salmonella pullorum)	S1np001   (Salmonella Newport SL254; GP)
S1np002   (Salmonella Newport SL317)	S2sa001   (Salmonella salamae (ssp. II))
S3di001   (Salmonella diarizonae (ssp. IIIb))	S3ar001   (Salmonella arizonae (ssp. IIIa); GP)
S4ho001   (Salmonella houtenae (ssp. IV))	S5bo001   (Salmonella bongori)
EccoK12   (Escherichia coli K12; GP)	EccoO157   (Escherichia coli O157:H7; GP)
EccoCFT73   (Escherichia coli CFT073; GP)	Ecco042   (Escherichia coli 042)
EccoE2348   (Escherichia coli E2348/69; GP)	Shfl2a   (Shigella flexneri 2a; GP)
ShdyM1316   (Shigella dysenteriae M131649; GP)	Shso53G   (Shigella sonnei 53G)
Klpn   (Klebsiella pneumoniae; GP)	Ewca   (Erwinia carotovora SCRI1043)
Ewam   (Erwinia amylovora)	Srma   (Serratia marscensens)
YrpsCO92   (Yersinia pestis CO92; GP)	Yren8081   (Yersinia enterocolitica 8081; GP)
VbchO1   (Vibrio cholerae; GP)	(user)

  (G = GenBank Genome page; P = GenBank protein list)

User sequence (optional). No FASTA headers, please!

Output format:       PostScript     PDF
 

Please NOTE that some queries may require more than 30s to complete!