EnterixV :: HPV

Displays a multiple alignment of the Human Papilloma Virus (HPV) 16 genome with related HP viruses. A complete description can be found here.

Address or gene name in the HPV 16 (reference) genome:

Address range: 1-7905. The complete gene list can be found here.

Conservation criterion for drawing the conserved regions in the alignment: letter agreement (agree) information content (infocon) phylogenetic distance (phylogen) distance from a center sequence (kkno) distance from an unknown center sequence (kunk)

Types of functional sites in the display:       Genes

Genomes to be included in the display (up to 11); by default, the first 11 genomes are selected.

HPV18	HPV31	HPV33	HPV35	HPV39
HPV45	HPV52	HPV56	HPV58	HPV59
HPV68b	HPV6	HPV11	HPV42	HPV44
HPV53	HPV54	HPV61	HPV72	HPV81
TRDNA445	TRDNA455	TRDNA456	TRDNA481	TRDNA504
TRDNA513	TRDNA571	USR (user)

User sequence (optional). No FASTA headers, please!

Output format:       PostScript     PDF
 

Please NOTE that some queries may require more than 30s to complete!