Menteric::EccoK12

Displays a multiple alignment of the Escherichia coli K12 genome with related bacteria.

Address or gene name in the EccoK12 (reference) genome:

Address range: 1-4639221. The complete gene list can be found here.

Conservation criterion for drawing the conserved regions in the alignment: letter agreement (agree) information content (infocon) phylogenetic distance (phylogen) distance from a center sequence (kkno) distance from an unknown center sequence (kunk)

Types of functional sites in the display:       Genes     Promoters     Protein binding sites
 

Genomes to be included in the display (up to 11); by default, the first 11 genomes are selected.

EccoO157   (Escherichia coli O157:H7; GP)	EccoCFT73   (Escherichia coli CFT073; GP)
Ecco042   (Escherichia coli 042)	EccoE2348   (Escherichia coli E2348/69; GP)
Shfl2a   (Shigella flexneri 2a; GP)	ShdyM1316   (Shigella dysenteriae M131649; GP)
Shso53G   (Shigella sonnei 53G)	S1tm001   (Salmonella typhimurium LT2; GP)
S1ty001   (Salmonella typhi CT18; GP)	S1pa001   (Salmonella paratyphi A; GP)
S1pc001   (Salmonella paratyphi C)	S1en007   (Salmonella enteritidis str. P125109; GP)
Klpn   (Klebsiella pneumoniae; GP)	Ewca   (Erwinia carotovora SCRI1043)
Ewam   (Erwinia amylovora)	Srma   (Serratia marscensens)
YrpsCO92   (Yersinia pestis CO92; GP)	Yren8081   (Yersinia enterocolitica 8081; GP)
VbchO1   (Vibrio cholerae; GP)	PsaePAO1   (Pseudomonas aeruginosa PAO1; GP)
Csak   (Cronobacter sakazakii BAA-894; GP)	Ciko   (Citrobacter koseri; GP)
(user)

  (G = GenBank Genome page; P = GenBank protein list)

User sequence (optional). No FASTA headers, please!

Output format:       PostScript     PDF
 

Please NOTE that some queries may require more than 30s to complete!