Menteric::Ciko

Displays a multiple alignment of the Citrobacter koseri genome with related bacteria.

Address or gene name in the Ciko (reference) genome:

Address range: 1-4735357 (including the plasmids). The complete gene list can be found here.

Conservation criterion for drawing the conserved regions in the alignment: letter agreement (agree) information content (infocon) phylogenetic distance (phylogen) distance from a center sequence (kkno) distance from an unknown center sequence (kunk)

Types of functional sites in the display:       Genes     Promoters     Protein binding sites
 

Genomes to be included in the display (up to 11); by default, the first 11 genomes are selected.

Ciro   (Citrobacter rodentium)	Csak   (Cronobacter sakazakii; GP)
EccoK12   (Escherichia coli K-12; GP)	EccoO157   (Escherichia coli O157:H7; GP)
EccoCFT73   (Escherichia coli CFT073; GP)	Ecco042   (Escherichia coli 042)
EccoE2348   (Escherichia coli E2348/69; GP)	Shfl2a   (Shigella flexneri 2a; GP)
ShdyM1316   (Shigella dysenteriae M131649; GP)	Shso53G   (Shigella sonnei 53G)
S1tm001   (Salmonella typhimurium LT2; GP)	S1ty001   (Salmonella typhi CT18; GP)
S1pa001   (Salmonella paratyphi A; GP)	Klpn   (Klebsiella pneumoniae; GP)
Ewca   (Erwinia carotovora SCRI1043)	Ewam   (Erwinia amylovora)
Srma   (Serratia marscensens)	YrpsCO92   (Yersinia pestis CO92; GP)
Yren8081   (Yersinia enterocolitica 8081; GP)	VbchO1   (Vibrio cholerae; GP)
PsaePAO1   (Pseudomonas aeruginosa PAO1; GP)	(user)

  (G = GenBank Genome page; P = GenBank protein list)

User sequence (optional). No FASTA headers, please!

Output format:       PostScript     PDF
 

Please NOTE that some queries may require more than 30s to complete!