Abbreviations for bacterial species names


The set of bacterial genomes used in comparative analyses consists of five E. coli strains, twenty-three strains of Salmonella, and multiple strains from several species from related genera. For simplicity, the names were abbreviated in all graphical representations as follows:


  (1-9,11)   EccoK12   Escherichia coli K-12   (E. coli) GP
  (1-9,11)   EccoO157   Escherichia coli 0157:H7 (Enterohemorragic E. coli) GP
  (1-9,11)   EccoCFT73   Escherichia coli CFT073 GP
  (1-9,11)   Ecco042   Escherichia coli 042
  (1-9,11)   EccoE2348   Escherichia coli E2348/69 GP
  (1,3,7-9)   Csak   Cronobacter sakazakii BAA-894 GP
  (8)   Ctur   Cronobacter turicensis GP
  (1,3,7-9)   Ciko   Citrobacter koseri GP
  (8)   Ciro   Citrobacter rodentium
  (1-9,11)   Shfl2a   Shigella flexneri 2a str. 301 GP
  (1-9,11)   ShdyM1316   Shigella dysenteriae M131649
  (1-9,11)   Shso53G   Shigella sonnei 53G
  (1-9,11)   S1tm001   Salmonella typhimurium LT2 GP
  (2,6,11)   S1tm007a, S1tm007f   Salmonella typhimurium 14028
  (2,4-6,11)   S1tm002   Salmonella Typhimurium SL1344
  (1-9)   S1ty001   Salmonella typhi CT18 GP
  (2,4-6,11)   S1ty002   Salmonella typhi Ty2 GP
  (1-9,11)   S1pa001   Salmonella paratyphi A GP
  (2,4-6,11)   S1pb001   Salmonella paratyphi B GP
  (2,4-6,11)   S1pb002   Salmonella paratyphi B SARB47
  (1-6,11)   S1pc001   Salmonella paratyphi C
  (2,4-6,11)   S1en002   Salmonella enteritidis PT4
  (2,4-6,11)   S1en001   Salmonella enteritidis
  (2,4-6,11)   S1en003   Salmonella enteritidis
  (1,2,4,11)   S1en007   Salmonella enteritidis str. P125109 GP
  (2,4-6,11)   S1du001   Salmonella dublin GP
  (2,4-6,11)   S1ga001   Salmonella gallinarum str. 287/91 GP
  (1,2,4,11)   S1ga002   Salmonella pullorum
  (2,4-6,11)   S1np002   Salmonella Newport SL317
  (2,4-6,11)   S1np001   Salmonella Newport SL254 GP
  (2,4-6,11)   S2sa001   Salmonella salamae (ssp. II)
  (2,4-6,11)   S3di001   Salmonella diarizonae (ssp. IIIb)
  (2,4-6,11)   S3ar001   Salmonella arizonae (ssp. IIIa) GP
  (2,4-6,11)   S4ho001   Salmonella houtenae (ssp. IV)
  (2,4-6,11)   S5bo001   Salmonella bongori
  (1-9,11)   Klpn   Klebsiella pneumoniae GP
  (6)   Klox   Klebsiella oxytoca
  (2,4-6,8,9,11)   Ewca   Erwinia carotovora subspecies atroseptica SCRI1043
  (1-9,11)   Ewam   Erwinia amylovora
  (1-9,11)   Srma   Serratia marscenses
  (1-9,11)   YrpsCO92   Yersinia pestis GP
  (1-9,11)   Yren8081   Yersinia enterocolitica (type 0:8) GP
  (1-9)   VbchO1   Vibrio cholerae GP
  (1,3,8-10)   PsaePAO1   Pseudomonas aeruginosa PAO1 GP
  (10)   PsaePA7   Pseudomonas aeruginosa PA7 GP
  (10)   PsaeLES   Pseudomonas aeruginosa LES GP
  (10)   PsaePA14   Pseudomonas aeruginosa PA14 GP
  (10)   PsenL48   Pseudomonas entomophila L48 GP
  (10)   PsflPfO1   Pseudomonas fluorescens PfO-1 GP
  (10)   PsflPf5   Pseudomonas fluorescens Pf-5 GP
  (10)   Psmeymp   Pseudomonas mendocina ymp GP
  (10)   PspuW619   Pseudomonas putida W619
  (10)   PspuF1   Pseudomonas putida F1 GP
  (10)   PspuKT244   Pseudomonas putida KT2440 GP
  (10)   PsstA1501   Pseudomonas stutzeri A1501 GP
  (10)   Pssy1448A   Pseudomonas syringae 1448A GP
  (10)   PssyB728a   Pseudomonas syringae B728a GP
  (10)   PssyDC300   Pseudomonas syringae DC3000 GP

Species marked with a '1'-'11' in the first column are included in the comparative views using E. coli K-12 (1), S. typhimurium LT2 (2), E. coli O157:H7 (3), S. typhi CT18 (4), S. paratyphi A (5), K. pneumoniae (6), E. sakazakii ATCC BAA-894 (7), C. koseri (8), Y. pestis CO92 (9), P. aeruginosa PAO1 (10) and S. enteritidis str. P125109 (11), respectively, as the reference genome. G = GenBank Genome page; P = GenBank protein list.