Menteric multiple alignment   Menteric::YrpsCO92

Displays a multiple alignment of the Yersinia pestis CO-92 genome with related bacteria.

Address or gene name in the YrpsCO92 (reference) genome:

Address range: 1-4829855 (including the plasmids). The complete gene list can be found here.

Conservation criterion for drawing the conserved regions in the alignment:

Types of functional sites in the display:       Genes     Promoters     Protein binding sites

Genomes to be included in the display (up to 11); by default, the first 11 genomes are selected.

Yren8081   (Yersinia enterocolitica 8081; GP) Csak   (Cronobacter sakazakii BAA-894; GP)
Ciko   (Citrobacter koseri; GP) EccoK12   (Escherichia coli K12; GP)
EccoO157   (Escherichia coli O157:H7; GP) EccoCFT73   (Escherichia coli CFT073; GP)
Ecco042   (Escherichia coli 042) EccoE2348   (Escherichia coli E2348/69; GP)
Shfl2a   (Shigella flexneri 2a; GP) ShdyM1316   (Shigella dysenteriae M131649; GP)
Shso53G   (Shigella sonnei 53G) S1tm001   (Salmonella typhimurium LT2; GP)
S1ty001   (Salmonella typhi CT18; GP) S1pa001   (Salmonella paratyphi A; GP)
Klpn   (Klebsiella pneumoniae; GP) Ewca   (Erwinia carotovora SCRI1043)
Ewam   (Erwinia amylovora) Srma   (Serratia marscensens)
YrpsCO92   (Yersinia pestis CO92; GP) VbchO1   (Vibrio cholerae; GP)
PsaePAO1   (Pseudomonas aeruginosa PAO1; GP) (user)
  (G = GenBank Genome page; P = GenBank protein list)

User sequence (optional). No FASTA headers, please!

Output format:       PostScript     PDF

Please NOTE that some queries may require more than 30s to complete!

Page last revised Jan 7 2010.