Menteric multiple alignment   Menteric::S1tm001

Displays a multiple alignment of the Salmonella typhimurium LT2 genome with related bacteria.

Address or gene name in the S1tm001 (reference) genome:

Address range: 1-4951371 (including the plasmids). The complete gene list can be found here.

Conservation criterion for drawing the conserved regions in the alignment:

Types of functional sites in the display:       Genes     Promoters     Protein binding sites
 

Genomes to be included in the display (up to 11); by default, the first 11 genomes are selected.

S1tm002   (Salmonella typhimurium SL1344) S1tm007a   (Salmonella typhimurium 14028)
S1tm007f   (Salmonella typhimurium 14028) S1ty001   (Salmonella typhi CT18; GP)
S1ty002   (Salmonella typhi Ty2; GP) S1pa001   (Salmonella paratyphi A; GP)
S1pb001   (Salmonella paratyphi B; GP) S1pb002   (Salmonella paratyphi B SARB47)
S1pc001   (Salmonella paratyphi C) S1en001   (Salmonella enteritidis)
S1en002   (Salmonella enteritidis PT4) S1en003   (Salmonella enteritidis)
S1du001   (Salmonella dublin; GP) S1ga001   (Salmonella gallinarum str. 287/91; GP)
S1ga002   (Salmonella pullorum) S1np001   (Salmonella Newport SL254; GP)
S1np002   (Salmonella Newport SL317) S2sa001   (Salmonella salamae (ssp. II))
S3di001   (Salmonella diarizonae (ssp. IIIb)) S3ar001   (Salmonella arizonae (ssp. IIIa); GP)
S4ho001   (Salmonella houtenae (ssp. IV)) S5bo001   (Salmonella bongori)
EccoK12   (Escherichia coli K12; GP) EccoO157   (Escherichia coli O157:H7; GP)
EccoCFT73   (Escherichia coli CFT073; GP) Ecco042   (Escherichia coli 042)
EccoE2348   (Escherichia coli E2348/69; GP) Shfl2a   (Shigella flexneri 2a; GP)
ShdyM1316   (Shigella dysenteriae M131649; GP) Shso53G   (Shigella sonnei 53G)
Klpn   (Klebsiella pneumoniae; GP) Ewca   (Erwinia carotovora SCRI1043)
Ewam   (Erwinia amylovora) Srma   (Serratia marscensens)
YrpsCO92   (Yersinia pestis CO92; GP) Yren8081   (Yersinia enterocolitica 8081; GP)
VbchO1   (Vibrio cholerae; GP) (user)
  (G = GenBank Genome page; P = GenBank protein list)

User sequence (optional). No FASTA headers, please!



Output format:       PostScript     PDF
 

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Page last revised Jan 7 2010.