The set of bacterial genomes used in comparative analyses consists of
five E. coli strains, twenty-three strains of Salmonella, and multiple
strains from several species from related genera. For simplicity, the names
were abbreviated in all graphical representations as follows:
| (1-9,11) | EccoK12 | Escherichia coli K-12 (E. coli) GP | |||
| (1-9,11) | EccoO157 | Escherichia coli 0157:H7 (Enterohemorragic E. coli) GP | |||
| (1-9,11) | EccoCFT73 | Escherichia coli CFT073 GP | |||
| (1-9,11) | Ecco042 | Escherichia coli 042 | |||
| (1-9,11) | EccoE2348 | Escherichia coli E2348/69 GP | |||
| (1,3,7-9) | Csak | Cronobacter sakazakii BAA-894 GP | |||
| (8) | Ctur | Cronobacter turicensis GP | |||
| (1,3,7-9) | Ciko | Citrobacter koseri GP | |||
| (8) | Ciro | Citrobacter rodentium | |||
| (1-9,11) | Shfl2a | Shigella flexneri 2a str. 301 GP | |||
| (1-9,11) | ShdyM1316 | Shigella dysenteriae M131649 | |||
| (1-9,11) | Shso53G | Shigella sonnei 53G | |||
| (1-9,11) | S1tm001 | Salmonella typhimurium LT2 GP | |||
| (2,6,11) | S1tm007a, S1tm007f | Salmonella typhimurium 14028 | |||
| (2,4-6,11) | S1tm002 | Salmonella Typhimurium SL1344 | |||
| (1-9) | S1ty001 | Salmonella typhi CT18 GP | |||
| (2,4-6,11) | S1ty002 | Salmonella typhi Ty2 GP | |||
| (1-9,11) | S1pa001 | Salmonella paratyphi A GP | |||
| (2,4-6,11) | S1pb001 | Salmonella paratyphi B GP | |||
| (2,4-6,11) | S1pb002 | Salmonella paratyphi B SARB47 | |||
| (1-6,11) | S1pc001 | Salmonella paratyphi C | |||
| (2,4-6,11) | S1en002 | Salmonella enteritidis PT4 | |||
| (2,4-6,11) | S1en001 | Salmonella enteritidis | |||
| (2,4-6,11) | S1en003 | Salmonella enteritidis | |||
| (1,2,4,11) | S1en007 | Salmonella enteritidis str. P125109 GP | |||
| (2,4-6,11) | S1du001 | Salmonella dublin GP | |||
| (2,4-6,11) | S1ga001 | Salmonella gallinarum str. 287/91 GP | |||
| (1,2,4,11) | S1ga002 | Salmonella pullorum | |||
| (2,4-6,11) | S1np002 | Salmonella Newport SL317 | |||
| (2,4-6,11) | S1np001 | Salmonella Newport SL254 GP | |||
| (2,4-6,11) | S2sa001 | Salmonella salamae (ssp. II) | |||
| (2,4-6,11) | S3di001 | Salmonella diarizonae (ssp. IIIb) | |||
| (2,4-6,11) | S3ar001 | Salmonella arizonae (ssp. IIIa) GP | |||
| (2,4-6,11) | S4ho001 | Salmonella houtenae (ssp. IV) | |||
| (2,4-6,11) | S5bo001 | Salmonella bongori | |||
| (1-9,11) | Klpn | Klebsiella pneumoniae GP | |||
| (6) | Klox | Klebsiella oxytoca | |||
| (2,4-6,8,9,11) | Ewca | Erwinia carotovora subspecies atroseptica SCRI1043 | |||
| (1-9,11) | Ewam | Erwinia amylovora | |||
| (1-9,11) | Srma | Serratia marscenses | |||
| (1-9,11) | YrpsCO92 | Yersinia pestis GP | |||
| (1-9,11) | Yren8081 | Yersinia enterocolitica (type 0:8) GP | |||
| (1-9) | VbchO1 | Vibrio cholerae GP | |||
| (1,3,8-10) | PsaePAO1 | Pseudomonas aeruginosa PAO1 GP | |||
| (10) | PsaePA7 | Pseudomonas aeruginosa PA7 GP | |||
| (10) | PsaeLES | Pseudomonas aeruginosa LES GP | |||
| (10) | PsaePA14 | Pseudomonas aeruginosa PA14 GP | |||
| (10) | PsenL48 | Pseudomonas entomophila L48 GP | |||
| (10) | PsflPfO1 | Pseudomonas fluorescens PfO-1 GP | |||
| (10) | PsflPf5 | Pseudomonas fluorescens Pf-5 GP | |||
| (10) | Psmeymp | Pseudomonas mendocina ymp GP | |||
| (10) | PspuW619 | Pseudomonas putida W619 | |||
| (10) | PspuF1 | Pseudomonas putida F1 GP | |||
| (10) | PspuKT244 | Pseudomonas putida KT2440 GP | |||
| (10) | PsstA1501 | Pseudomonas stutzeri A1501 GP | |||
| (10) | Pssy1448A | Pseudomonas syringae 1448A GP | |||
| (10) | PssyB728a | Pseudomonas syringae B728a GP | |||
| (10) | PssyDC300 | Pseudomonas syringae DC3000 GP |
Species marked with a '1'-'11' in the first column are
included in the comparative views using E. coli K-12 (1),
S. typhimurium LT2 (2), E. coli O157:H7 (3),
S. typhi CT18 (4), S. paratyphi A (5), K. pneumoniae (6),
E. sakazakii ATCC BAA-894 (7), C. koseri (8),
Y. pestis CO92 (9), P. aeruginosa PAO1 (10) and S. enteritidis str. P125109 (11),
respectively, as the reference genome.
G = GenBank Genome page;
P = GenBank protein list.