The EnteriX site allows comparative views of a reference genome (E.
coli K-12 or O157:H7, S. typhimurium LT2, S. typhi
CT18, S. paratyphi A, K. pneumoniae, C. sakazakii,
C. koseri, Y. pestis, P. aeruginosa PAO1 or
S. enteritidis str. P125109) with
sequences from several related bacteria using two different
visualization tools.
The Enteric server offers large-scale views of pairwise alignments,
with point-and-click capabilities to retrieve related gene and alignment
information.
The Menteric tool displays nucleotide-level multiple alignments of
the bacterial sequences, along with regulatory site annotations which
the user interested in conservation and functional studies may want to explore
further.
Each tool is accompanied by documentation on its features
and provides links to related sites of potential interest, for easy
navigation.
The
Enteric server
The
Menteric server
If you use this software in a publication, please cite:
A complete list of relevant bibliographical references is here.
| Species | Abbr. | Project & Source | Stage |
| Escherichia coli K12 | EccoK12 | U. of Wisconsin;
NCBI | Complete |
| E. coli enterohemorrhagic strain O157:H7 EDL933 | EccoO157 | U. of Wisconsin;
NCBI | Complete |
| Escherichia coli CFT073 | EccoCFT73 | U. Wisconsin;
NCBI | Complete |
| Escherichia coli 042 | Ecco042 | Sanger Center | Complete |
| Escherichia coli E2348 | EccoE2348 | Sanger Center | Contigs |
| Shigella flexneri 2a str. 301 | Shfl2a | Microbial Genome Center ChMPH; NCBI | Complete |
| Shigella dysenteriae M131649 | ShdyM1316 | Sanger Center | Contigs |
| Shigella sonnei 53G | Shso53G | Sanger Center | Complete |
| Salmonella typhimurium LT2 | S1tm001 | WUSTL;
NCBI | Complete |
| Salmonella typhimurium 14028 | S1tm007a, S1tm007f | SKCC | Contigs |
| Salmonella typhimurium SL1344 | S1tm002 | Sanger Center | Contigs |
| Salmonella typhi CT18 | S1ty001 | Sanger Center;
NCBI | Complete |
| Salmonella typhi Ty2 | S1ty002 | U. Wisconsin;
NCBI | Complete |
| Salmonella paratyphi A | S1pa001 |
WUSTL;
NCBI | Complete |
| Salmonella paratyphi B | S1pb001 |
WUSTL;
NCBI | Contigs |
| Salmonella paratyphi B SARB47 | S1pb002 | WUSTL | Contigs |
| Salmonella enteritidis | S1en001 | U. of Illinois, Urbana Champaign | Contigs |
| Salmonella enteritidis PT4 | S1en002 | Sanger Center | Complete |
| Salmonella enteritidis SARB17 | S1en003 | WUSTL | Contigs |
| Salmonella enteritidis str. P125109 | S1en007 | Sanger Center, NCBI | Complete |
| Salmonella dublin | S1du001 | U. of Illinois, Urbana Champaign | Contigs |
| Salmonella gallinarum str. 287/91 | S1ga001 | Sanger Center, NCBI | Complete |
| Salmonella pullorum | S1ga002 | salmonella.org | Contigs |
| Salmonella Newport SL254 | S1np001 | TIGR/JCVI | Complete |
| Salmonella Newport SL317 | S1np002 | TIGR/JCVI | Complete |
| Salmonella salamae (ssp. II) | S2sa001 | WUSTL | Contigs |
| Salmonella diarizonae (ssp. IIIb) | S3di001 | WUSTL | Contigs |
| Salmonella arizonae (ssp. IIIa) | S3ar001 | WUSTL | Contigs |
| Salmonella houtenae (ssp. IV) | S4ho001 | WUSTL | Contigs |
| Salmonella bongori | S5bo001 | Sanger Center | Complete |
| Klebsiella pneumoniae | Klpn | WUSTL | Complete |
| Klebsiella oxytoca | Klox | WUSTL | Contigs |
| Erwinia carotovora subspecies atroseptica SCRI1043 | Ewca | Sanger Center;
NCBI | Complete |
| Erwinia amylovora | Ewam | Sanger Center | Complete |
| Serratia marscenses | Srma | Sanger Center | Complete |
| Yersinia pestis CO92 | YrpsCO92 | Sanger Center;
NCBI | Complete |
| Yersinia enterocolitica (type 0:8) | Yren8081 | Sanger Center | Complete |
| Vibrio cholerae | VbchO1 | TIGR;
NCBI | Complete |
| Cronobacter sakazakii | Csak | WUSTL;
NCBI | Complete |
| Citrobacter koseri | Ciko | WUSTL;
NCBI | Complete |
| Citrobacter rodentium | Ciro | Sanger Center | Complete |
| Pseudomonas aeruginosa PAO1 | PsaePAO1 | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas aeruginosa PA7 | PsaePA7 | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas aeruginosa LES | PsaeLES | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas aeruginosa PA14 | PsaePA14 | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas entomophila L48 | PsenL48 | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas fluorescens PfO-1 | PsflPfO1 | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas fluorescens Pf-5 | PsflPf5 | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas mendocina ymp | Psmeymp | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas putida W619 | PspuW619 | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas putida F1 | PspuF1 | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas putida KT2440 | PspuKT244 | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas stutzeri A1501 | PsstA1501 | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas syringae 1448A | Pssy1448A | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas syringae B728a | PssyB728b | Pseudomonas Genome Db;
NCBI | Complete |
| Pseudomonas syringae DC3000 | PssyDC300 | Pseudomonas Genome Db;
NCBI | Complete |
EnteriX is provided to you by CBCB and collaborators:
Liliana Florea (CBCB, University of Maryland);
Webb Miller, Cathy Riemer and Scott Schwartz (Penn State
Center for Comparative Genomics and Bioinformatics);
Michael McClelland (Sidney Kimmel Cancer Center);
Steve Forsythe (Nottingham Trent University, UK);
Vince Lee (CBMG, University of Maryland);
Richard Wilson (Genome Sequencing Center, Washington University, St. Louis).
Contact us:
florea@umiacs.umd.edu